CCP4I FREE DOWNLOAD
Documentation for the current release version of CCP4i. For each printer you should enter a single word name for the printer which will appear on the menu for the user to choose a printer and the command string required to send a job to that printer. Bug in CCP4i script The format of this file is: You should enter the command that you use locally to do this. Then before starting ccp4i, try entering on the command line:.
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This allows the specification of a full path i. Various programs can be used to display postscript files on screen. If a project directory or file is not found it is highlighted in red in the viewer.
Please send details of new interfaces to ccp4gui ccp4. You can drag-and-drop the projects into the folders. When using the “Run remote” option to run a task on a remote machine, it possible that the scripts generated by CCP4i are different to those generated when running the same job on the local machine e. Note that you will need to restart CCP4i for the new task to become visible. This problem appears to have been the result of originally setting up the project in 4. If tclsh is not present then jobs may start but never actually run.
CCP4I: Trouble Shooting
The user is given the option to enter options at the time that they submit the job so the command takes the form: See the CCP4mg on-line documentation. There are several possible problems which could cause this test to fail – the symptoms and diagnoses are:.
If your machine does not support the fonts specified in the file, you will need to edit the file to change the default values of ccp4ii following parameters: This sets the maximum number of lines of a logfile that CCP4i’s built-in logfile browser will display in a single “frame”. We will initially try to run the task with the same parameters as you but with our own data, however this may not always be possible.
The loggraph program has options to print postscript files in colour or monochrome and several places in the interface could potentially print out text files. CCP4i will automatically unpack and copy the files to the correct places and add the new task to the menu in the appropriate Module.
To test running on a remote machine: A number of new projects are currently being planned, some of which are described briefly on a separate CCP4i Projects page. This is most likely because the remote machine has a different version of CCP4i installed or because patches or changes have been applied to either the local or remote installations which mean that the two versions are no longer in synch.
Old CCP4i did not make copies of input data files in the project directory but this interface has the option to Collect input files on the project context menu.
CCP4i: The CCP4 Graphical User Interface
CCP4 folder in the user home area dating from version 6. Please include as much as information as you can – see here for details about reporting problems. For each printer you should enter a single word name for the printer which will appear on the menu for the user to choose a printer and the command string required to send a job to that printer.
More information on batch queues can be found on a separate page. For help or to report new problems, please send mail to ccp4gui ccp4.
You should enter the full ccp4j name of the ShelxS program in the configure window. If bubble help is not enabled then only the message line help will be dcp4i. After a delay, or if there is already a version running, then it tries to display the HTML file using the ‘ netscape -remote ‘ option you can read about this by entering ‘ netscape -help ‘ on the command line or look at the Netscape help on this topic.
CCP4i: The CCP4 Graphical User Interface
This indicates that in fact the script is running normally and that you should ignore the message from Arp. This is usually because you didn’t create a project directory when you first started the interface, so CCP4i has nowhere to write the parameter files to. When the Interface runs a job remotely or in batch, it cc;4i setup the Cdp4i program suite. MODELLER is an homology modelling program which can be used to reduce manual editing of structures particularly in molecular replacement.
If an MTZ file contains a large number of columns of data, then it is possible that the selection menu will be longer than the screen and some columns will be inaccessible. You should enter the command that you use locally to do this.